Data GIS Blog
On the last day of classes, December 4, the Duke community will have a very special treat: a visit from artist and certified medical illustrator Jennifer McCormick. Jennifer has been actively exhibiting and speaking about her work for several years, including a recent TEDx talk at Wake Forest University and an exhibit at the Durham Arts Council.
In Jennifer’s work as a medical illustrator, she partners with attorneys to create visualizations that explain complex injuries and medical procedures to jury members. In her fine art, however, she builds on the histories and x-rays of patients to explore “an opportunity for healing, hope, and acceptance.” Her unique pieces transform the original clinical imagery of the injury into gorgeous, natural, holistic scenes. In her artist talks, she speaks of “the power of intention” and “our forgotten superpowers” to raise awareness of the importance of art and spirituality for healing.
Jennifer will join us for the final Visualization Friday Forum of the semester. It will be an opportunity for visualization enthusiasts, clinicians, medical imaging specialists, legal scholars, and those interested in the intersection between health and art to gather together for a presentation and conversation. The talk will occur in the standard time slot for the Visualization Friday Forum — noon on Friday, December 4 — but the location is changing to accommodate a larger audience. For one week only, we will meet in Duke Hospital North, Room 2003.
The Visualization Friday Forum is sponsored by the Duke University Libraries (Data and Visualization Services), Duke Information Science + Studies (ISS), and the DiVE group. Jennifer’s visit will also be sponsored by the Trent Center for Bioethics, Humanities, & History of Medicine and Duke Law – Academic Technologies.
We are so excited Jennifer has agreed to travel to Duke for a visit. Please mark your calendars for this event. If you would like to speak with Jennifer about medical illustrations or the intersection between medicine and spirituality, please contact Angela Zoss.
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Calling all Duke undergrad and grad students! Have you worked on a course or research project that included some kind of visualization? Maybe you made a map for a history class paper. Maybe you invented a new type of chart to summarize the results of your experiment. Maybe you played around with an infographic builder just for fun.
Now is the time to start thinking about submitting those visualizations to the Duke Student Data Visualization Contest. It’s easy — just grab a screenshot or export an image of your visualization, write up a short description explaining how you made it, and submit it using our Sakai project site (search for “2016 DataVis Contest”). The deadline is right after finals this fall, so just block in a little extra time at the end of the semester once you’re done with your final assignments and projects.
Not sure what would work as a good submission? Check out our Flickr gallery with examples from the past two years.
Not sure if you’re eligible? If were a Duke student (that is, enrolled in a degree-granting program, so no post-docs) any time during 2015, and you did the work while you were a student, you’re golden!
Want to know more about the technical details and submission instructions? Check out the full contest instruction site.
Ever wonder what the difference between a shapefile and a geodatabase is in GIS and why each storage format is used for different purposes? It is important to decide which format to use before beginning your project so you do not have to convert many files midway through your project.
Basics About Shapefiles:
Shapefiles are simple storage formats that have been used in ArcMap since the 1990s when Esri created ArcView (the early version of ArcMap 10.3). Therefore, shapefiles have many limitations such as:
- Takes up more storage space on your computer than a geodatabase
- Do not support names in fields longer than 10 characters
- Cannot store date and time in the same field
- Do not support raster files
- Do not store NULL values in a field; when a value is NULL, a shapefile will use 0 instead
Users are allowed to create points, lines, and polygons with a shapefile. One shapefile must have at least 3 files but most shapefiles have around 6 files. A shapefile must have:
- .shp – this file stores the geometry of the feature
- .shx – this file stores the index of the geometry
- .dbf – this file stores the attribute information for the feature
All files for the shapefile must be stored in the same location with the same name or else the shapefile will not load. When a shapefile is opened in Windows Explorer it will look different than when opened in ArcCatalog.
Basics About Geodatabases:
Geodatabases allow users to thematically organize their data and store spatial databases, tables, and raster datasets. There are two types of single user geodatabases: File Geodatabase and Personal Geodatabase. File geodatabases have many benefits including:
- 1 TB of storage limits of each dataset
- Better performance capabilities than Personal Geodatabase
- Many users can view data inside the File Geodatabase while the geodatabase is being edited by another user
- The geodatabase can be compressed which helps reduce the geodatabases’ size on the disk
On the other hand, Personal Geodatabases were originally designed to be used in conjunction with Microsoft Access and the Geodatabase is stored as an Access file (.mdb). Therefore Personal Geodatabases can be opened directly in Microsoft Access, but the entire geodatabase can only have 2 GB of storage.
To organize your data into themes you can create Feature Datasets within a geodatabase. Feature datasets store Feature Classes (which are the equivalent to shapefiles) with the same coordinate system. Like shapefiles, users can create points, lines, and polygons with feature classes; feature classes also have the ability to create annotation, and dimension features.
In order to create advanced datasets (such as add a network dataset, a geometric network, a terrain dataset, a parcel fabric, or run topology on an existing layer) in ArcGIS, you will need to create a Feature Dataset.
You will not be able to access any files of a File geodatabase in Windows Explorer. When you do, the Durham_County geodatabase shown above will look like this:
- When you copy shapefiles anytime, use ArcCatalog. If you use Windows Explorer and do not select all the files for a shapefile, the shapefile will be corrupt and will not load.
- When using a geodatabase, use a File Geodatabase. There is more storage capacity, multiple users can view/read the database at the same time, and the file geodatabase runs tools and queries faster than a Personal Geodatabase.
- Use a shapefile when you want to read the attribute table or when you have a one or two tools/processes you need to do. Long-term projects should be organized into a File Geodatabase and Feature Datasets.
- Many files downloaded from the internet are shapefiles. To convert them into your geodatabase, right click the shapefile, click “Export,” and select “To Geodatabase (single).”
Data and Visualization Services is proud and excited to welcome Eric Monson, Ph.D., our newest staff member. Eric joins the team as our Data Visualization Analyst, working with Angela Zoss to provide support for data visualization across Duke’s campus and community.
Eric worked for several years under the supervision of Rachael Brady, who was the head of the Visualization Technology Group (now the Visualization and Interactive Systems group), the founder of the DiVE, and a hub for the visualization community at Duke. Though transitioning from work in applied physics, Eric quickly became an active member of the broader visualization research community, sharing his experiences developing interactive visualization applications through online forums and professional organizations. His natural design sense contributes to an elegant portfolio of past work, and his work on projects in both the sciences and the humanities gives him an extremely wide range of experience with different datasets, tools, and techniques.
Since DVS began offering visualization services in 2012, Eric has been an active supporter and collaborator. While continuing to work as a Research Scientist, Eric has co-organized the Visualization Friday Forum speaker series, teamed up with Angela on instructional sessions, and been an active supporter of visualization events and initiatives. He is an experienced and patient instructor and will bring many years of consulting experience to bear in this new role.
Over the past three years, demand for visualization support has steadily increased at Duke. With an active workshop series, guest lectures in a variety of courses, individual and small-group consultations, and programming such as the Student Data Visualization Contest, DVS is very happy to be able to boast two staff members with visualization expertise. In the near future, we hope to increase our visualization workshop offerings and continue to identify powerful but easy-to-use tools and techniques that will meet the needs of Duke visualizers. Taking advantage of Eric’s background in sciences and humanities, DVS looks forward to being able to answer a broader range of questions and offer a more diverse set of solutions.
Please join us in welcoming Eric to the team! As always, feel free to contact email@example.com with any questions or data-driven research needs.
The post Welcoming our new Data Visualization Analyst — Eric Monson appeared first on Duke Libraries Data & Visualization Services.
Data and Visualization Services is happy to announce its Fall 2015 Workshop Series. With a range of workshops covering basic data skills to data visualization, we have a wide range of courses for different interests and skill levels.. New (and redesigned) workshops include:
- OpenRefine: Data Mining and Transformations, Text Normalization
- Historical GIS
- Advanced Excel for Data Projects
- Analysis with R
- Webscraping and Gathering Data from Websites
Workshop descriptions and registration information are available at:
Date OpenRefine: Data Mining and Transformations, Text Normalization Sep 9 Basic Data Cleaning and Analysis for Data Tables Sep 15 Introduction to ArcGIS Sep 16 Easy Interactive Charts and Maps with Tableau Sep 18 Introduction to Stata Sep 22 Historical GIS Sep 23 Advanced Excel for Data Projects Sep 28 Easy Interactive Charts and Maps with Tableau Sep 29 Analysis with R Sep 30 ArcGIS Online Oct 1 Web Scraping and Gathering Data from Websites Oct 2 Advanced Excel for Data Projects Oct 6 Basic Data Cleaning and Analysis for Data Tables Oct 7 Introduction to Stata Oct 14 Introduction to ArcGIS Oct 15 OpenRefine: Data Mining and Transformations, Text Normalization Oct 20 Analysis with R Oct 20